LocusCompare is a suite of tools and datasets to visualize the colocalization of summary statistics from pairs of association datasets (e.g. GWAS and eQTL). These tools and datasets include:
For instructions please follow these links:
To download stand-alone version:
GPL v3 or later
If you use locuscompare, please cite the following paper: https://www.nature.com/articles/s41588-019-0404-0
Boxiang Liu, Michael J. Gloudemans, Abhiram S. Rao, Erik Ingelsson & Stephen B. Montgomery (2019) Abundant associations with gene expression complicate GWAS follow-up, Nature Genetics
LocusCompare current hosts more than 200 GWAS datasets and 48 eQTL datasets. We provide a convenient bash script for you to download these data.
Link to bash script: https://github.com/mikegloudemans/gwas-download
We are grateful to the individuals and organizations who have made their data publically available. Below is a list of studies we included in LocusCompare. If we missed a reference to your study, please email Boxiang Liu <bliu2@stanford.edu> or Mike Gloudemans <mgloud@stanford.edu>.
Current GWAS datasets are distributed across various websites, making them difficult to find and download. LocusCompare provides a platform for sharing GWAS and QTL datasets. If you would like to contribute your data to LocusCompare, please fill out the following form. Alternatively, you can email Boxiang Liu or Mike Gloudemans to add your study. (* = mandatory)